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2011

  • Vladimir Shulaev, Daniel J Sargent, Ross N Crowhurst, Todd C Mockler, Otto Folkerts, Arthur L Delcher, Pankaj Jaiswal, Keithanne Mockaotis, Aaron Liston, Shrinivasrao P Mane, Paul Burns, Thomas M Davis, Janet P Slovin, Nahla Bassil, Roger P Hellens, Clive Evans, Tim Harkins, Chinnappa Kodira, Brian Desany, Oswald R Crastam Roderick V Jensen, Andrew C Allan, Todd P Michael, Joao Carlos Setubal, Jean-Marc Celton, D Jasper G Rees, Kelly P Williams, Sarah H Holt, Juan Jairo Ruiz Rojas, Mithu Chatterjee, Bo Liu, Herman Silva, Lee Meisel, Avital Adato, Sergei A Filichkin, Michela Troggio, Roberto Viola, Tia-Lynn Ashman, Hao Wang, Palitha Dharmawardhana, Justin Elser, Rajani Raja, Henry D Priet, Douglas W Bruant Jr, Samuel E Fox, Scott A Givan, Larry J Wilhelm, Sushma Naithani, Alan Christoffels et al. The genome of woodland strawberry (Fragaria vesca). Nature Genetics. 2011. 43: 109-116. Doi:10.1038/ng.740
  • Samuel Kwofie, Ulf Schaefer, Vijayaraghava Sundararajan, Vladimir Bajic, Alan Christoffels. HCVpro: Hepatitis C virus protein interaction database (2011). Infection, Genetics and Evolution.
  • Vijay B Bansode, Simon A A Travers, Amelia C Crampin, Bagrey Ngwira, Neil French, Judith R Glynn and Grace P McCormack (2011) Reverse Transcriptase drug resistance mutations in HIV-1 Subtype C infected patients on ART in Karonga District, Malawi. AIDS Research and Therapy 8(38) doi:10.1186/1742-6405-8-38
  • Redmond N. E., Raleigh J, van Soest R.W.M., Kelly M., Travers S.A.A., Bradshaw B., Vartia S., McCormack G.P. (2011) Molecular Systematics of the Order Haplosclerida (Phylum Porifera) Employing Ribosomal (28S rRNA) and Mitochondrial (mtCOI, NAD1) Gene Sequence Data. Plos One. 6(9) e24344
  • Samuel K Kwofie, Aleksandar Radovanovic, Vijayaraghava S Sundararajan, Monique Maqungo, Alan Christoffels and Vladimir B Bajic. Dragon Exploratory System on Hepatitis C Virus (DESHCV). Infection, Genetics and Evolution. 2011. 11(4):734-9
  • Sarah Mwangi, Edwin Murungi, Mario Jonas and Alan Christoffels. Evolutionary Genomics of Glossina morsitans immune-related Serine proteases and Serine Protease inhibitors. Infection, Genetics and Evolution. 2011. 11(4): 740-745.
  • Seager I, Leeson MD, Crampin A, Mulawa D, French D, Glynn J, Travers S.A.A., McCormack GP. HIV-1 mutational patterns in HIV-1 subtype C infected long-term survivors in Karonga District Malawi: correction and further analysis. AIDS Research and Human Retroviruses, June 2011
  • Vijayaraghava Seshadri Sundararajan, Musa Nur Gabere, Ashley Pretorius, Saleem Adam, Alan Christoffels, Minna Lehvaslaiho, John A. C. Archer and Vladimir B. Bajic. DAMPD: a manually curated antimicrobial peptide database. Nucleic Acids Research, 2011 (1-5). doi:10.1093/nar/gkr1063
  • Niamh E. Redmond, Jean Raleigh, Rob W. M. van Soest, Michelle Kelly, Simon A. A. Travers, Brian Bradshaw, Salla Vartia, Kelly M. Stephens, Grace P. McCormack. Phylogenetic Relationships of the Marine Haplosclerida (Phylum Porifera) Employing Ribosomal (28S rRNA) and Mitochondrial (cox1, nad1) Gene Sequence Data. PLoS ONE. 2011. 6(9): e24344
  • Semegni JY, Wamalwa M, Gaujoux R, Harkins GW, Gray A, Martin DP. NASP: a parallel program for identifying evolutionarily conserved nucleic acid secondary structures from nucleotide sequence alignments. Bioinformatics. 2011 Sep 1;27(17):2443-5. Epub 2011 Jul 14.
  • Monjane AL, Harkins GW, Martin DP, Lemey P, Lefeuvre P, Shepherd DN, Oluwafemi S, Simuyandi M, Zinga I, Komba EK, Lakoutene DP, Mandakombo N, Mboukoulida J, Semballa S, Tagne A, Tiendrébéogo F, Erdmann JB, van Antwerpen T, Owor BE, Flett B, Ramusi M, Windram OP, Syed R, Lett JM, Briddon RW, Markham PG, Rybicki EP, Varsani A. Reconstructing the history of maize streak virus strain a dispersal to reveal diversification hot spots and its origin in southern Africa. Journal of Virology. 2011 Sep;85(18):9623-36. Epub 2011 Jun 29.
  • Lefeuvre P, Harkins GW, Lett JM, Briddon RW, Chase MW, Moury B, Martin DP. Evolutionary time-scale of the begomoviruses: evidence from integrated sequences in the Nicotiana genome. PLoS One. 2011;6(5):e19193. Epub 2011 May 16.