CURRENT
PROJECTS
Transcription control
- Modeling transcriptional regulatory
regions
- Functional analysis, modeling and discovery of transcriptional mechanism
of neuronal genes
- Endocrinology related genes and their transcription control - modeling
and discovery
- Immunogenetics - disease and immunology related genes and their
transcription control - modeling and discovery
Genetic regulatory networks
- Gene regulatory networks
- Protein interaction networks
- Bio-medical text-mining (gene networks, TF-TF interactions, protein-protein
interactions based on PubMed)
- Functional genomics
Genome, proteome and transcriptome mining
tools
- Representation of biological signals and motifs
- Gene signals and regions modeling
- Specialized gene prediction tools
- Specialized sequence extraction tools
- Specialized genome comparison and data extraction tools
Promoter annotation
- Human genome promoter annotation and function association
- Fugu rubripes genome promoter annotation and function association
- Blind clustering of human, Mus musculus, Fugu rubripes
and Drosophila melanogaster promoters
Databases of important genetic signals
- Database of human splice sites and gene structures
- Database of translation initiation sites in human
- Database of splice sites in Fugu rubripes and gene structures
- Database of translation initiation sites in Fugu rubripes
- Human Regulome database
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